PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003023G0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 234aa    MW: 25487.6 Da    PI: 7.1944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003023G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-1972122155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g
  PH01003023G0010  72 TQYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFVTAEAAARAYDRAARRIRG 122
                      58********.**********843...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-1572105No hitNo description
PfamPF008473.5E-1273122IPR001471AP2/ERF domain
SMARTSM003801.9E-3573136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3073131IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2173130IPR016177DNA-binding domain
PROSITE profilePS5103223.98673130IPR001471AP2/ERF domain
PRINTSPR003674.8E-117485IPR001471AP2/ERF domain
PRINTSPR003674.8E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MCGGAIISDL MPPSSHGSGK RSLCAADLWP QVPAAAGQTH ELEFTVHDTR TGKEAATATD  60
EPARKQRGER RTQYRGIRRR PWGKWAAEIR DPAKGARVWL GTFVTAEAAA RAYDRAARRI  120
RGTKAKVNFS NEDTPPTDYY HGHYASPSFY SAVAAPMALA SPREQVMIEY YDAVDMGMGF  180
FQPPPYAAVD CAGASAVVPV STTPPDHMQV VYGQHQEVGA QLWSFDDITD MPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-2173129562ATERF1
2gcc_A1e-2173129562ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16380RKQRGERRTQYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0934428e-74FP093442.1 Phyllostachys edulis cDNA clone: bphyem206a20, full insert sequence.
GenBankFP0968368e-74FP096836.1 Phyllostachys edulis cDNA clone: bphyem109m14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082821.11e-40PREDICTED: ethylene-responsive transcription factor ERF073
SwissprotP427367e-37RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A068V9B87e-41A0A068V9B8_COFCA; Uncharacterized protein
STRINGBra001640.1-P1e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169191010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-29ethylene-responsive element binding protein